Wednesday, 10 December 2014

CLINICAL VALIDITY OF PHARMACOGENOMIC TESTING

clinical validity in pharmacogenomics
In genetic testing, clinical validity can be defined as the ability to predict a phenotype associated with a genotype. For typical genetic diseases (i.e. chromosomal aberrations and Mendelian disorders) clinical validity is approaching 100%, since there is a direct cause-effect relation between a certain genetic mutation and the presence of the disease.

Much different are things for what concerns pharmacogenomics since the scientific evidence of the association between certain genetic variant(s) and the response to a drug can be sometime controversial. It can happen so that a genetic variant found to be significantly associated with high sensitivity to a certain treatment in one study, is found to be of no pharmacogenomic relevance in another reseach. In extreme cases a certain genetic variant is found to exert a total opposite effect from another author.  This issue of controversial evidence is still a major obstacle to the diffusion of pharmacogenetic testing in daily routine since it mostly affects the trust of health professionals in pharmacogenomic solutions.

However, it must be said that in certain cases pharmacogenomic correlations have been well characterized and replicated by several independent studies. In such cases the pharmacogenomic evidence has been coded into clinical practice guidelines by known working groups of specialists (see for instance the guidelines from the Clinical Pharmacogenetics Implementation Consortium - CPIC, www.pharmagkb.org/page/cipc, the Royal Dutch Association for the Advancement of Pharmacy-Pharmacogenetics Working Group – KNMP-PWG, the EGAPP working group or the ACMG). By following these guidelines, health care operators can confidently take decisions in drug selection and dose adjustment.

An example of pharmacogenomic evidence successfully confirmed and applied in daily clinical practice is the one between the allele B*5701 in the HLA-B gene and the susceptibility to severe hypersensitivity reaction to abacavir treatment in HIV-positive patients. This pharmacogenetic test is now routinely performed to help infectivologists in selecting the most appropriate treatment combination for HIV-positive patients.


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